PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G131700.1
Common NameB456_006G131700, LOC105799438
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 506aa    MW: 55592.2 Da    PI: 6.3022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G131700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.4e-07263284223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++Cgk F+r  nL+ H+r H
  Gorai.006G131700.1 263 FCTICGKGFKRDANLRMHMRGH 284
                         6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-5261285No hitNo description
PROSITE profilePS5015711.946262289IPR007087Zinc finger, C2H2
SMARTSM003550.0026262284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5263313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
SMARTSM0035553311344IPR015880Zinc finger, C2H2-like
SMARTSM0035526349371IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MDLKERVCGE LQKEVPKGAS FTNFNTQHQQ KWEDPSSTSD YSTRIEPPFQ AFNQTSQTQS  60
LLLCNNQIKV PMQDGSVNDL LQASKIQDWD PSAMLNNLSF LGQKIHQLQD LVYLIIGRKG  120
QVLGGPDELL VQQQQLVTAD LTSIIVQLIS TAGSLLPSVK QTLSAATTSL GQCGEFGGVV  180
FPSSAQGLND GVQPQNAGGS KVSEPPNSVD ITSNNGNEQS NHIIEEHELK DEEDAEEGEN  240
LLPGTYEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGEEYKT PGALAKPTKE  300
SSSEPTIIKR YSCPYAGCKR NKDHKKFQPL KTILCVKNHY KRTHCDKSYI CSRCNTKKFS  360
VIADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHITLFQG HTPAIPSDEI KAAPAGTSDG  420
ATNKVGSVNF NLSSYVSSES EVQSSSMDIK GGIDDAVGYF SPLSFDTCNF GGFHEFPRPP  480
FDDSESSFAF LLSRSCNYSQ KSGEE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485445.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
RefseqXP_012485446.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
RefseqXP_012485447.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
RefseqXP_012485448.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A0D2RVJ50.0A0A0D2RVJ5_G
STRINGVIT_18s0072g00840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69772644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.20.0C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]